I'm pretty sure the NYT wants to help the Democrats, so anything that looks like advice to Trump not to do what he's doing should probably be translated into an expression of fear that it might work.
One might say that Trump's continued assertions about rigged elections keep Republican voters stirred up. They may get the idea that they need to win by enough to overcome the cheating. They may feel outraged that cheaters have been stealing elections and that it's crucial to fight back right now.
Alternatively, it might be that Trump doesn't mind losing the GOP majority in the Senate. He might prefer to fight his way back to power in 2024 with his party excluded from power. He'll be more of an outsider and able to attack everything in a much more interesting and theatrical way if we're not distracted by the day to day efforts of McConnell et al.